ABAC Database

Movie generated with PyMOL

A: c.1.8.1 (red/blue)

View c.1.8.1 in Scoppi
PDB: 1viw (Search literature with GoPubMed)
FA: Amylase, catalytic domain
SF: (Trans)glycosidases
SP: Yellow mealworm (Tenebrio molitor), larva/Yellow mealworm (Tenebrio molitor), larva

B: b.29.1.1 (yellow)

View b.29.1.1 in Scoppi
PDB: 1viw (Search literature with GoPubMed)
FA: Legume lectins
SF: Concanavalin A-like lectins/glucanases
SP: Kidney bean (Phaseolus vulgaris)

C: g.3.2.1 (green)

View g.3.2.1 in Scoppi
PDB: 1clv (Search literature with GoPubMed)
FA: Plant inhibitors of proteinases and amylases
SF: Plant inhibitors of proteinases and amylases
SP: Prince`s feather (Amaranthus hypochondriacus)

	Center of mass, domain c.1.8.1
	Center of mass, domain b.29.1.1
	Center of mass of interface atoms, domain b.29.1.1
	Center of mass, domain g.3.2.1
	Center of mass of interface atoms, domain g.3.2.1

Geometric Parameters

RMSD A1-A2	0.61
Shared interface atoms	368 (88.9%)
Angle between green and yellow interface:	11.59
Angle between green and yellow domain:	17.10
Distance between center of mass of green and yellow interface (in Angstrom):	4.03
Distance between center of mass of green and yellow domain (in Angstrom)	15.63

Sequence Alignment of domain c.1.8.1

	Meaning
kdanfasgrnsivhlfewkwndiadecerflqpqgfggvqisppneylvadgrpWWerYQpvsyiintrsgnesaftdmt kdanfasgrnsivhlfewkwndiadecerflqpqgfggvqisppneylvadgrpWWerYqpvsyiintrsgdesaftdmt ## #_ rrcndagvriyvdaVinHmtgMngvgtsgssadhdgmnypavpygsgdfhspcEVNNYQDadNvrnceLVGLrdlnagsd rrcndagvriyvdavinhmtGMngvgtsgssadhdgmnypavpygsgdfhspcEVNNYqdadnvrncELVGLrdlnqgsd _ _ _# #####__ _ _#### yvrgvlidymnhmidlgvagfRvDAaKHmspgdlsvifdglknlntdygfadgarpfiyqEvIdLGGEaiskneytgfgc yvrgvlidymnhmidlgvagfrvDaaKHmspgdlsvifsglknlntdygfadgarpfiyqEVIdLggEaiskneytgfgc _ #_ ## #_# #__# vleFqfgVslgnafqggnqlknlanwgpewgllegldavvfvdNhDNqRTGGSQIltyknpkpykmaiafmlahpygttr vleFqfgVslgnafqggnqlknlanwgpewgllegldavvfvdnhDNqRTGGsQIltyknpkpykmaiafmlahpygttr # # _ ## ####_## imssfdftdNDqgppqdgsgnlispginddntcsngyvcehrwrqvygmvgfrnave imssfdftdNDqgppqdgsgnlispginddntcsngyvcehrwrqvygmvgfrnave ##

Aligned interface residues . : #	32 (72%)
Aligned, similar interface residues (with positive BLOSUM value) : #	32 (72%)
Raw BLOSUM-Score for the latter residues	182


Capital letters	Residue interacts with domain A
#	Identical interacting residues
:	Residues are similar and interact
.	Residues are not similar and interact
_	Only one residue interacts

Sequences of domain b.29.1.1 and g.3.2.1

atetsfiidafnktnlilQGDatvssngnlqlSYNSYDSMsRafysapiqirdsttgnvasfdtnftmnirTHRqSAVgl dfvlvpvqdtvtvefdtFLsrisiDvnNndiksvpwdvhdydgqnaevritynsstkvfsvslsnpstgksnnvsttvel ekevydwvsvgfsaTSGAYQWSYethdvlswsfsskfi CIPKWNRCGpkMDgVpccepytcTSDYYGNcS



atetsfiidafnktnlilQGDatvssngnlqlSYNSYDSMsRafysapiqirdsttgnvasfdtnftmnirTHRqSAVgl 
dfvlvpvqdtvtvefdtFLsrisiDvnNndiksvpwdvhdydgqnaevritynsstkvfsvslsnpstgksnnvsttvel 
ekevydwvsvgfsaTSGAYQWSYethdvlswsfsskfi 


CIPKWNRCGpkMDgVpccepytcTSDYYGNcS

Similarities between domain b.29.1.1 and g.3.2.1

Residue Pair	BLOSUM	Score	Avg.-Distance
Tyr186-Tyr528	7	11.16	1.22
Thr72-Thr524	5	5.16	2.53
Val80-Val515	4	4.71	2.29
Ser33-Ser532	4	4.60	2.40
Tyr37-Trp505	2	4.51	1.50
Tyr190-Thr524	-2	4.04	1.49
Ser189-Asn530	1	3.57	1.46
Trp188-Tyr527	2	3.39	1.61
Asp38-Asn506	1	3.18	1.69
Phe105-Asp513	-3	2.53	1.48
Asp21-Lys504	-1	2.60	1.05
Trp188-Cys508	-2	2.31	2.01
Gln187-Tyr528	-1	2.17	1.70
Ala185-Arg507	-1	2.25	1.32
Thr182-Ile502	-1	2.26	1.87
Trp188-Asp526	-4	2.25	1.31
Ser36-Trp505	-3	1.88	1.87
Ser39-Asn506	1	1.72	1.93
Leu106-Val515	1	1.44	1.69
Ser78-Cys501	-1	1.34	2.20
Ser183-Asn506	1	1.39	2.41
Ser39-Pro503	-1	1.38	1.62
Leu106-Asp513	-4	1.26	2.06
Met40-Pro503	-2	1.29	2.03
Phe105-Gly509	-3	1.21	1.19
Ser189-Gly529	0	1.10	1.36
Asn35-Trp505	-4	1.16	1.27
Arg74-Tyr527	-2	1.10	1.35
Gly184-Asn506	0	0.93	1.61
Gly184-Arg507	-2	0.95	1.57
Ser183-Ile502	-2	0.90	1.65
Ala79-Val515	0	0.90	1.66
Tyr37-Asn530	-2	0.83	1.75
Thr182-Cys501	-1	0.88	1.67
Ala79-Ile502	-1	0.78	0.67
Ser36-Lys504	0	0.56	1.33
Gln187-Ser525	0	0.62	2.07
Ser39-Lys504	0	0.71	0.86
Gln187-Gly529	-2	0.47	1.58
Tyr190-Ser525	-2	0.41	1.76
Tyr186-Gly529	-3	0.46	1.61
Trp188-Gly529	-2	0.54	1.39
Gly184-Cys508	-3	0.31	2.08
Tyr190-Asn530	-2	0.36	1.92
Tyr34-Ser532	-2	0.26	2.74
Arg74-Asp526	-2	0.34	1.98
Ala185-Gly529	0	0.14	2.58
His73-Thr524	-2	0.13	2.62
Phe105-Val515	-1	0.19	2.44
Ala185-Cys508	0	0.20	2.41
Total Score		88.79

Symbol	Atom match between
	C-alpha atoms within 3 A
	C-beta atoms within 3 A
	backbone atoms within 3 A
	side chain atoms within 2 A

The score for each residue pair is simply its BLOSUM score (if positive) + the sum of atom pair scores. The latter are between 0 and 1, with 0 for 3A distance or above and 1 for exact coordinate matches, linearly interpolated.