ABAC Database

Movie generated with PyMOL

A: c.1.8.1 (red/blue)

View c.1.8.1 in Scoppi
PDB: 1viw (Search literature with GoPubMed)
FA: Amylase, catalytic domain
SF: (Trans)glycosidases
SP: Yellow mealworm (Tenebrio molitor), larva/Pig (Sus scrofa)

B: b.29.1.1 (yellow)

View b.29.1.1 in Scoppi
PDB: 1viw (Search literature with GoPubMed)
FA: Legume lectins
SF: Concanavalin A-like lectins/glucanases
SP: Kidney bean (Phaseolus vulgaris)

C: b.5.1.1 (green)

View b.5.1.1 in Scoppi
PDB: 1bvn (Search literature with GoPubMed)
FA: alpha-Amylase inhibitor tendamistat
SF: alpha-Amylase inhibitor tendamistat
SP: Streptomyces tendae

	Center of mass, domain c.1.8.1
	Center of mass, domain b.29.1.1
	Center of mass of interface atoms, domain b.29.1.1
	Center of mass, domain b.5.1.1
	Center of mass of interface atoms, domain b.5.1.1

Geometric Parameters

RMSD A1-A2	0.89
Shared interface atoms	408 (94.2%)
Angle between green and yellow interface:	1.11
Angle between green and yellow domain:	5.93
Distance between center of mass of green and yellow interface (in Angstrom):	0.64
Distance between center of mass of green and yellow domain (in Angstrom)	7.92

Sequence Alignment of domain c.1.8.1

	Meaning
-kdanfasgrnsivhlfewkwndiadecerflqpqgfggvqisppneylvad--grpWWerYQpvsyiintrsgnesaft qyapqtqsgrtdivhlfewrwvdialecerylgpkgfggvqvsppnenvvvtnpsrpWWerYQpvsyklctrsgnenefr ## ## dmtrrcndagvriyvdaVinHmtgMngvgtsgssa----dhdgmnypavpygsgdfh------spcEVNNYQDadNvrnc dmvtrcnnvgvriyvdavinhmcgsgaaagtgttcgsycnpgsrefpavpysawdfndgkcktasggIESYNdpyqvrdc _ _ _ _:.:#._ _ eLVGLrdlnagsdyvrgvlidymnhmidlgvagfRvDAaKHmspgdlsvifdglknlntdygfadgarpfiyqEvIdLGG qLVgLldlalekdyvrsmiadylnklidigvagfrlDAsK-HmwpgdikavldklhnlntnwfpagsrpfifqEvIdLGG ##_# _ ## # _ # # ### Eaiskney-tgfgcvleFqfgVslgnaf--qggnqlknlanwgpewgl-legldavvfvdNhDNqRTGGSQIltyknpkp Eaissseyf-gngrvtefkygaklgtvvrkwsgekmsylknwgegwg-fmpsdralvfvdnhD-----------nqrGHG # _ _ _ # ___ ykmaiafml--------------ahpygttrimssfdftdNDqgppqdgsgnlispg------inddntcsngyv--ceh AGGSsiltfwdarlykvavgfmlahpygftrvmssyrwarnfvngEdvnDWigppnnngvikevtinadttcgndwvceh ____ __ _ __ rwrqvygmvgfrnave- rwreirnmvwfrnvvdg

Aligned interface residues . : #	22 (50%)
Aligned, similar interface residues (with positive BLOSUM value) : #	20 (45%)
Raw BLOSUM-Score for the latter residues	108


Capital letters	Residue interacts with domain A
#	Identical interacting residues
:	Residues are similar and interact
.	Residues are not similar and interact
_	Only one residue interacts

Sequences of domain b.29.1.1 and b.5.1.1

atetsfiidafnktnlilQGDatvssngnlqlSYNSYDSMsRafysapiqirdsttgnvasfdtnftmnirTHRqSAVgl dfvlvpvqdtvtvefdtFLsrisiDvnNndiksvpwdvhdydgqnaevritynsstkvfsvslsnpstgksnnvsttvel ekevydwvsvgfsaTSGAYQWSYethdvlswsfsskfi vsepapscvtLYQSWRYsQadngcaetvtvkvvyeddtegLcYavapgQITTVGDGYIGshgharylarcl



atetsfiidafnktnlilQGDatvssngnlqlSYNSYDSMsRafysapiqirdsttgnvasfdtnftmnirTHRqSAVgl 
dfvlvpvqdtvtvefdtFLsrisiDvnNndiksvpwdvhdydgqnaevritynsstkvfsvslsnpstgksnnvsttvel 
ekevydwvsvgfsaTSGAYQWSYethdvlswsfsskfi 


vsepapscvtLYQSWRYsQadngcaetvtvkvvyeddtegLcYavapgQITTVGDGYIGshgharylarcl

Similarities between domain b.29.1.1 and b.5.1.1

Residue Pair	BLOSUM	Score	Avg.-Distance
Trp188-Trp818	11	12.34	1.66
Tyr190-Tyr860	7	9.17	1.38
Ser189-Ser817	4	8.31	1.15
Tyr34-Tyr815	7	8.18	1.24
Gln19-Gln852	5	7.97	1.89
Tyr186-Trp818	2	6.03	1.49
Trp188-Tyr860	2	3.91	1.09
Ala185-Arg819	-1	3.48	1.26
Gly184-Tyr820	-3	3.00	1.20
Asp38-Tyr820	-3	2.59	1.06
Val80-Asp858	-3	2.45	1.16
Met40-Thr855	-1	2.20	1.35
Ser39-Thr855	1	2.08	2.19
Met40-Thr854	-1	1.65	1.35
Thr182-Val856	0	1.67	2.00
Asp21-Ile853	-3	1.77	1.67
Trp188-Ser817	-3	1.58	1.42
Ala79-Asp858	-2	1.51	1.49
Ser39-Gln822	0	1.18	1.23
Tyr190-Gln816	-1	1.24	1.76
Trp188-Ile861	-3	1.06	1.40
Gly20-Ile853	-4	1.15	1.27
Ala79-Gly857	0	1.23	1.16
Ser33-Gln822	0	1.03	1.97
Gln187-Ile861	-3	1.02	1.46
Ser183-Tyr820	-2	1.01	1.99
Gln187-Trp818	-2	0.86	2.48
Gly20-Gln852	-2	0.86	1.71
Ser33-Tyr815	-2	0.56	1.33
Ala185-Trp818	-3	0.37	1.90
Asp112-Leu844	-4	0.38	1.85
Phe105-Asp858	-3	0.38	1.86
Gln187-Tyr860	-1	0.42	1.74
Ser36-Ile853	-2	0.34	1.97
Arg74-Tyr860	-2	0.41	1.77
Thr182-Gly857	-2	0.39	2.41
Ser36-Gln822	0	0.39	1.83
Trp188-Gly859	-2	0.25	2.25
Val80-Gly857	-3	0.12	2.63
Ser78-Val856	-2	0.03	2.90
Tyr190-Ser817	-2	0.07	2.80
Tyr186-Arg819	-2	0.13	2.61
Asp21-Gln852	0	0.05	2.86
Ser183-Gln822	0	0.12	2.83
Total Score		94.93

Symbol	Atom match between
	C-alpha atoms within 3 A
	C-beta atoms within 3 A
	backbone atoms within 3 A
	side chain atoms within 2 A

The score for each residue pair is simply its BLOSUM score (if positive) + the sum of atom pair scores. The latter are between 0 and 1, with 0 for 3A distance or above and 1 for exact coordinate matches, linearly interpolated.