ABAC Database

Movie generated with PyMOL

A: b.47.1.2 (red/blue)

View b.47.1.2 in Scoppi
PDB: 1jmo (Search literature with GoPubMed)
FA: Eukaryotic proteases
SF: Trypsin-like serine proteases
SP: Human (Homo sapiens)/Cow (Bos taurus)

B: e.1.1.1 (yellow)

View e.1.1.1 in Scoppi
PDB: 1jmo (Search literature with GoPubMed)
FA: Serpins
SF: Serpins
SP: Human (Homo sapiens)

C: g.3.15.2 (green)

View g.3.15.2 in Scoppi
PDB: 1hrt (Search literature with GoPubMed)
FA: Hirudin-like
SF: Leech antihemostatic proteins
SP: Leech (Hirudo medicinalis)

	Center of mass, domain b.47.1.2
	Center of mass, domain e.1.1.1
	Center of mass of interface atoms, domain e.1.1.1
	Center of mass, domain g.3.15.2
	Center of mass of interface atoms, domain g.3.15.2

Geometric Parameters

RMSD A1-A2	0.67
Shared interface atoms	392 (66.7%)
Angle between green and yellow interface:	20.41
Angle between green and yellow domain:	41.73
Distance between center of mass of green and yellow interface (in Angstrom):	7.16
Distance between center of mass of green and yellow domain (in Angstrom)	34.05

Sequence Alignment of domain b.47.1.2

	Meaning
ivegsdaeigmspwqvmlFrKSPQELLCgaslisdrwvltaaHCllYPPWDKnftendlLvRigkhSrTRYernieKISM ivegqdaevglspwqvMlFRKSpQELLcgaslisdrwvltaaHcllYpPWdKnftvddlLvRigKhsRTRYerkvEkIsM _ #_##_####_ #_ #_##_# # # _ __### __#_# lekiyihprynwrENLdrdialmklkKpvafsdyihpvclpdretaasllqagykgrvtgwgnlkEtWTANVGKgqpSVl ldkiyihprynWkEnLdrdiallklkrpielsdyihpvclpdkqtaakllhagfkgrvtgwgNrrEtWttsvaevQpsvl _ #_# _ _ # #______ _ __ qvvnlpiverpvckdstrIritdnmfcagykpdegkrgdACEGDAggpfvmkspfnnrwyqmgiVSWGEGCdRdgkygfy qvvnlplverpvckaStRIritdnmfcagykpgegkrgdaCEGdSggpfvmkspynnrwyqmgivSWGEGCdRdgKygfy _ _# _###_: _###### # _ thvfrlkkwiqkvidqfgeatseyqtffnprtfgsgeadcglrplfekksledkterellesyidg thvfrlkkwiqkvidrlgstfgageadcglrplfekkqvqdqtekelfesyiegr-----------

Aligned interface residues . : #	35 (62%)
Aligned, similar interface residues (with positive BLOSUM value) : #	35 (62%)
Raw BLOSUM-Score for the latter residues	202


Capital letters	Residue interacts with domain A
#	Identical interacting residues
:	Residues are similar and interact
.	Residues are not similar and interact
_	Only one residue interacts

Sequences of domain e.1.1.1 and g.3.15.2

geEDDDLDLekIFseDdDidivdslsvsptdsdvsagnilqlfhgksriqrlnilnakfafnlyrvlkdqvntfdnifia pvgistamgmislglkgetheqvhsilhfkdfvnasskyeittihnlfrklthrlfrrnfgytlrsvndlyiqkqfpill dfktkvreyyfaeaqiadfsdpafisktnnhimkltkglikdalenidpatqmmilnciyfkgswvnkfpVEMTHNhnfr lnerevvkvsmmQtkgnflaandqelDcDilqleyvggismlivvpHKmsgmktleaqltprvverwqksmTnRtrevll pkfkleknynlveslklmgirmlfdkngnmagisdqriaidlfkhqgtitvneegtqattvtTVGFMPLSTQVRftvdRp flfliyehrtscllfmgrvanpsrs VVYTDcTesgqnLcLcEGSNVcgQgnkcilgsdgeknqcvtgegtPKPQSHNDGDFEEIPeEYLQ



geEDDDLDLekIFseDdDidivdslsvsptdsdvsagnilqlfhgksriqrlnilnakfafnlyrvlkdqvntfdnifia 
pvgistamgmislglkgetheqvhsilhfkdfvnasskyeittihnlfrklthrlfrrnfgytlrsvndlyiqkqfpill 
dfktkvreyyfaeaqiadfsdpafisktnnhimkltkglikdalenidpatqmmilnciyfkgswvnkfpVEMTHNhnfr 
lnerevvkvsmmQtkgnflaandqelDcDilqleyvggismlivvpHKmsgmktleaqltprvverwqksmTnRtrevll 
pkfkleknynlveslklmgirmlfdkngnmagisdqriaidlfkhqgtitvneegtqattvtTVGFMPLSTQVRftvdRp 
flfliyehrtscllfmgrvanpsrs 


VVYTDcTesgqnLcLcEGSNVcgQgnkcilgsdgeknqcvtgegtPKPQSHNDGDFEEIPeEYLQ

Similarities between domain e.1.1.1 and g.3.15.2

Residue Pair	BLOSUM	Score	Avg.-Distance
Asp59-Glu57	2	8.70	0.99
Asp58-Asp55	6	8.33	1.60
Gln447-Gln49	5	7.39	1.57
Phe441-Tyr3	3	6.85	1.35
Leu61-Ile59	2	6.72	1.43
Leu63-Leu64	4	4.34	1.99
Pro443-Val1	-2	4.19	1.20
Phe67-Tyr63	3	4.02	1.47
Thr438-Asp5	-1	3.79	1.10
Val439-Leu15	1	3.32	1.61
Lys343-Gln65	1	2.82	1.18
Met442-Val2	1	2.78	1.22
Met442-Val1	1	2.87	1.13
Ile66-Pro60	-3	2.65	1.01
Val448-Gln49	-2	2.59	1.70
Arg449-His51	0	2.41	1.19
Asp58-Glu57	2	2.31	2.53
Asp62-Pro60	-1	1.90	1.58
Leu63-Glu62	-3	1.53	1.85
Leu444-Val2	1	1.62	1.13
Thr438-Leu15	-1	1.34	1.66
Gln447-Ser50	0	1.31	1.69
Leu444-Val1	1	1.36	1.91
Thr446-His51	-2	1.04	1.44
Asp62-Ile59	-3	0.85	0.45
Ile66-Tyr63	-1	0.49	1.52
Pro443-Val2	-2	0.57	1.30
Gly440-Tyr3	-3	0.50	2.25
Met442-Tyr3	-1	0.53	2.47
Leu63-Tyr63	-1	0.54	2.19
Leu63-Pro60	-3	0.41	1.77
Gly440-Leu15	-4	0.21	2.37
Arg449-Ser50	-1	0.09	2.73
Phe441-Val21	-1	0.17	2.49
Gly440-Val21	-3	0.02	2.93
Gln447-His51	0	0.10	2.70
Phe67-Glu62	-3	0.04	2.89
Total Score		90.74

Symbol	Atom match between
	C-alpha atoms within 3 A
	C-beta atoms within 3 A
	backbone atoms within 3 A
	side chain atoms within 2 A

The score for each residue pair is simply its BLOSUM score (if positive) + the sum of atom pair scores. The latter are between 0 and 1, with 0 for 3A distance or above and 1 for exact coordinate matches, linearly interpolated.